kemal
5463f489a3
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End-to-end variant interpretation platform for rare genetic disease research: SvelteKit UI, FastAPI + PostgreSQL API, Nextflow/Ensembl VEP pipeline, LightGBM pathogenicity scoring with MLflow, K8s/ArgoCD/GCP infrastructure. Public test data only; no clinical claims.
46 lines
1.2 KiB
YAML
46 lines
1.2 KiB
YAML
services:
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db:
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image: postgres:16-alpine
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environment:
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POSTGRES_USER: rarelens
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POSTGRES_PASSWORD: rarelens
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POSTGRES_DB: rarelens
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ports: ["5432:5432"]
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volumes: [pgdata:/var/lib/postgresql/data]
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healthcheck:
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test: ["CMD-SHELL", "pg_isready -U rarelens"]
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interval: 5s
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retries: 10
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api:
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build: ./api
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environment:
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DATABASE_URL: postgresql+asyncpg://rarelens:rarelens@db:5432/rarelens
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MLFLOW_TRACKING_URI: http://mlflow:5000
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ports: ["8000:8000"]
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depends_on:
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db: { condition: service_healthy }
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volumes: ["./api:/app"]
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command: uvicorn app.main:app --host 0.0.0.0 --port 8000 --reload
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web:
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build:
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context: ./web
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target: build
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environment:
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PUBLIC_API_URL: http://localhost:8000
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ports: ["5173:5173"]
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depends_on: [api]
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volumes: ["./web:/app", "/app/node_modules"]
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command: npm run dev -- --host
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mlflow:
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image: ghcr.io/mlflow/mlflow:v2.16.0
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command: mlflow server --host 0.0.0.0 --backend-store-uri sqlite:///mlflow.db --default-artifact-root /mlruns
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ports: ["5000:5000"]
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volumes: [mlruns:/mlruns]
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volumes:
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pgdata:
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mlruns:
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