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rarelens/api/app/db.py
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Initial release: rarelens platform skeleton (AGPL-3.0)
End-to-end variant interpretation platform for rare genetic disease research:
SvelteKit UI, FastAPI + PostgreSQL API, Nextflow/Ensembl VEP pipeline,
LightGBM pathogenicity scoring with MLflow, K8s/ArgoCD/GCP infrastructure.
Public test data only; no clinical claims.
2026-09-11 16:55:35 +01:00

14 lines
426 B
Python

from collections.abc import AsyncIterator
from sqlalchemy.ext.asyncio import AsyncSession, async_sessionmaker, create_async_engine
from app.config import settings
engine = create_async_engine(settings.database_url, pool_pre_ping=True)
SessionLocal = async_sessionmaker(engine, expire_on_commit=False)
async def get_session() -> AsyncIterator[AsyncSession]:
async with SessionLocal() as session:
yield session