kemal
5463f489a3
ci / api (push) Failing after 10s
ci / terraform (push) Failing after 11s
ci / web (push) Failing after 35s
ci / pipeline (push) Failing after 2m29s
ci / images (api) (push) Skipped
ci / images (ml) (push) Skipped
ci / images (pipeline) (push) Skipped
ci / images (web) (push) Skipped
End-to-end variant interpretation platform for rare genetic disease research: SvelteKit UI, FastAPI + PostgreSQL API, Nextflow/Ensembl VEP pipeline, LightGBM pathogenicity scoring with MLflow, K8s/ArgoCD/GCP infrastructure. Public test data only; no clinical claims.
26 lines
512 B
Makefile
26 lines
512 B
Makefile
.PHONY: up down migrate test pipeline kind lint
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up:
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docker compose up -d --build
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down:
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docker compose down -v
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migrate:
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docker compose exec api alembic upgrade head
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test:
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cd api && uv run pytest -q
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cd web && npm test
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lint:
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cd api && uv run ruff check . && uv run mypy app
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cd web && npm run check
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pipeline:
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cd pipeline && nextflow run main.nf -profile docker --vcf ../data/example.vcf.gz --outdir results
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kind:
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kind create cluster --name rarelens || true
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kubectl apply -k infra/k8s/overlays/local
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