kemalandClaude Opus 5.5
0861b27c2b
Research notes R1-R4, documentation-study files A-E (source of the functional spec's `src:` tags) and PGx coverage CSVs, rewritten to use neutral naming and current project decisions (plan §2). Co-Authored-By: Claude Opus 5.5 <[email protected]> Claude-Session: https://claude.ai/code/session_01814GKVzZVL3FuF3DeiZXhv
3.5 KiB
3.5 KiB
| 1 | product | manifest | gene | variant_ids |
|---|---|---|---|---|
| 2 | GDA-ePGx | GDA_PGx-8v1-0_20042614_G | CYP1A2 | ilmnseq_rs35694136_ilmnfwd;ilmnseq_rs35694136_ilmnfwd_ilmndup1;ilmnseq_rs35694136_ilmnfwd_ilmndup2;ilmnseq_rs35694136_ilmnfwd_ilmndup3;ilmnseq_rs35694136_ilmnfwd_ilmndup4;ilmnseq_rs35694136_ilmnfwd_ilmndup5;ilmnseq_rs35694136_ilmnfwd_ilmndup6;ilmnseq_rs35694136_ilmnfwd_ilmndup7 |
| 3 | GDA-ePGx | GDA_PGx-8v1-0_20042614_G | CYP2D6 | ilmnseq_rs72549352_ilmnrev_F2BTindel_deg3a3b3_IlmnRep;ilmnseq_rs72549352_ilmnrev_F2BTindel_deg3a3b3_ilmndup1;ilmnseq_rs72549352_ilmnrev_F2BTindel_deg3a3b3_ilmndup3;ilmnseq_rs72549352_ilmnrev_F2BTindel_ilmndup1;ilmnseq_rs72549352_ilmnrev_F2BTindel_ilmndup3 |
| 4 | GDA-ePGx | GDA_PGx-8v1-0_20042614_G | CYP4F2 | ilmnseq_rs4020346_ilmnfwd |
| 5 | GDA-ePGx | GDA_PGx-8v1-0_20042614_G | UGT1A1 | ilmnseq_rs8175347_ilmnfwd_F2BTindel;ilmnseq_rs8175347_ilmnfwd_F2BTindel_ilmndup1;ilmnseq_rs8175347_ilmnrev;ilmnseq_rs8175347_ilmnrev_ilmndup1;ilmnseq_rs8175347_ilmnrev_ilmndup2;ilmnseq_rs8175347_ilmnrev_ilmndup3 |
| 6 | GSAv4-ePGx | GSA-PGx-48v4-0_20079540_E | CYP1A2 | IlmnSeq_rs35694136_IlmnFWD;ilmnseq_rs35694136_ilmnfwd_ilmndup2;ilmnseq_rs35694136_ilmnfwd_ilmndup3;ilmnseq_rs35694136_ilmnfwd_ilmndup4;ilmnseq_rs35694136_ilmnfwd_ilmndup5;ilmnseq_rs35694136_ilmnfwd_ilmndup6;ilmnseq_rs35694136_ilmnfwd_ilmndup7 |
| 7 | GSAv4-ePGx | GSA-PGx-48v4-0_20079540_E | CYP2C19 | IlmnSeq_rs367543002,ilmnseq_rs367543002_ilmnfwd,ilmnseq_rs367543002_ilmnfwd_ilmndup1,ilmnseq_rs367543002_ilmnrev_deg3a1b0_ilmndup1,rs367543002 |
| 8 | GSAv4-ePGx | GSA-PGx-48v4-0_20079540_E | CYP2C19 | ilmnseq_rs17882687_ilmnfwd_ilmndup2,ilmnseq_rs17882687_ilmnrev,ilmnseq_rs17882687_ilmnrev_ilmndup1,ilmnseq_rs17882687_ilmnrev_ilmndup2 |
| 9 | GSAv4-ePGx | GSA-PGx-48v4-0_20079540_E | CYP2C19 | IlmnSeq_rs113934938,ilmnseq_rs113934938_ilmnfwd,ilmnseq_rs113934938_ilmnfwd_ilmndup1,ilmnseq_rs113934938_ilmnfwd_ilmndup2,rs113934938 |
| 10 | GSAv4-ePGx | GSA-PGx-48v4-0_20079540_E | CYP2C9 | 10:96701973,ilmnseq_rs774607211_ilmnfwd_ilmndup1,ilmnseq_rs774607211_ilmnfwd_ilmndup2 |
| 11 | GSAv4-ePGx | GSA-PGx-48v4-0_20079540_E | CYP2D6 | ilmnseq_rs1135836_ilmnrev_deg3a3b0 |
| 12 | GSAv4-ePGx | GSA-PGx-48v4-0_20079540_E | CYP2D6 | PGX_IlmnSeq_rs769157652_BEST,ilmnseq_rs769157652_ilmnrev_F2BT,ilmnseq_rs769157652_ilmnrev_deg3a1b0 |
| 13 | GSAv4-ePGx | GSA-PGx-48v4-0_20079540_E | CYP4F2 | ilmnseq_rs4020346_ilmnfwd |
| 14 | GSAv4-ePGx | GSA-PGx-48v4-0_20079540_E | OPRM1 | ilmnseq_rs9384179.1_F2BT |
| 15 | GSAv4-ePGx | GSA-PGx-48v4-0_20079540_E | UGT1A1 | ilmnseq_rs8175347.2_ilmnrev_F2BTindel_cei_ilmndup31 |
| 16 | GCRA-ePGx | GCRA-PGx-24v1-0_20084467_C | COMT | ilmnseq_rs7287550_ilmnfwd_F2BT |
| 17 | GCRA-ePGx | GCRA-PGx-24v1-0_20084467_C | CYP1A2 | IlmnSeq_rs35694136;IlmnSeq_rs35694136_IlmnFWD;ilmnseq_rs35694136_ilmnfwd_ilmndup2;ilmnseq_rs35694136_ilmnfwd_ilmndup5;ilmnseq_rs35694136_ilmnfwd_ilmndup6;rs35694136 |
| 18 | GCRA-ePGx | GCRA-PGx-24v1-0_20084467_C | CYP2C19 | ilmnseq_rs367543002_ilmnfwd |
| 19 | GCRA-ePGx | GCRA-PGx-24v1-0_20084467_C | CYP2C19 | ilmnseq_rs17882687_ilmnfwd_ilmndup2,ilmnseq_rs17882687_ilmnrev_ilmndup1 |
| 20 | GCRA-ePGx | GCRA-PGx-24v1-0_20084467_C | CYP2C19 | IlmnSeq_rs113934938,ilmnseq_rs113934938_ilmnfwd,ilmnseq_rs113934938_ilmnfwd_ilmndup1,ilmnseq_rs113934938_ilmnfwd_ilmndup2,rs113934938 |
| 21 | GCRA-ePGx | GCRA-PGx-24v1-0_20084467_C | CYP2C9 | ilmnseq_rs774607211_ilmnrev,ilmnseq_rs774607211_ilmnrev_ilmndup2 |
| 22 | GCRA-ePGx | GCRA-PGx-24v1-0_20084467_C | CYP2D6 | ilmnseq_rs2004511_dup1 |
| 23 | GCRA-ePGx | GCRA-PGx-24v1-0_20084467_C | CYP2D6 | PGX_IlmnSeq_rs769157652_BEST,ilmnseq_rs769157652_ilmnrev,ilmnseq_rs769157652_ilmnrev_deg3a1b0,ilmnseq_rs769157652_ilmnrev_deg3a1b0_ilmndup1,ilmnseq_rs769157652_ilmnrev_ilmndup1,seq-rs61737947 |
| 24 | GCRA-ePGx | GCRA-PGx-24v1-0_20084467_C | CYP4F2 | ilmnseq_rs4020346_ilmnfwd |
| 25 | GCRA-ePGx | GCRA-PGx-24v1-0_20084467_C | OPRM1 | ilmnseq_rs9384179.1_F2BT |