kemalandClaude Opus 5.5
5c93e194e0
Raw X/Y and controls assembled from IDATs equal the vendor GTC arrays for 2138/2141 samples x 2.45M loci; 3 single-locus differences are recorded as K-009 (probable per-channel missing rule in AutoCall 1.6.2.2). Channel order X=Red confirmed (U1). `simurg ingest` processed all 2141 samples in 19 min (I/O-bound). AWS run cost ~$0.34 and left no resources. Co-Authored-By: Claude Opus 5.5 <[email protected]> Claude-Session: https://claude.ai/code/session_01814GKVzZVL3FuF3DeiZXhv
137 lines
2.7 KiB
JSON
137 lines
2.7 KiB
JSON
{
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"root": "/work/omni/data",
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"started": "2026-09-27T20:21:53Z",
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"n_gtc": 2141,
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"n_idat_pairs": 2141,
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"unpaired_idats": 0,
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"gtc_ok": 2141,
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"gtc_roundtrip_identical": 2141,
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"gtc_versions": [
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3
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],
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"gtc_autocall_versions": [
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"1.6.2.2"
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],
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"gtc_failures": [],
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"gtc_roundtrip_failures": [],
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"idat_ok": 2141,
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"idat_failures": [],
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"idat_midblock_itemsizes": [
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4
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],
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"idat_chip_types": [
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"BeadChip 4x10"
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],
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"bpm": {
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"num_loci": 2450000,
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"names": true,
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"snps": true,
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"chroms": true,
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"map_infos": true,
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"address_a": true,
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"assay_types": true,
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"normalization_lookups": true,
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"n_bins": 51
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},
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"p2_matched_gtc_idat": 2141,
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"p2_ok": 2138,
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"p2_total_diff_loci": 3,
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"p2_swapped_loci": 0,
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"p2_ours_missing_vendor_nonzero": 3,
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"p2_vendor_zero_ours_present": 802,
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"p2_failures": [
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{
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"gtc": "/work/omni/data/5767788121/5767788121_R01C01.gtc",
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"ok": false,
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"n_diff": 1,
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"n_missing": 3507,
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"vendor_zero": 3506,
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"swapped": 0,
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"ours_missing_vendor_nonzero": 1,
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"vendor_zero_ours_present": 0,
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"controls_equal": true,
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"examples": [
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{
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"locus": "rs178512",
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"assay": 0,
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"ours": [
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0,
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0
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],
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"vendor": [
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7086,
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0
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]
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}
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]
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},
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{
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"gtc": "/work/omni/data/5826354152/5826354152_R02C01.gtc",
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"ok": false,
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"n_diff": 1,
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"n_missing": 2320,
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"vendor_zero": 2319,
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"swapped": 0,
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"ours_missing_vendor_nonzero": 1,
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"vendor_zero_ours_present": 0,
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"controls_equal": true,
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"examples": [
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{
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"locus": "SNP12-29082770",
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"assay": 0,
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"ours": [
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0,
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0
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],
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"vendor": [
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0,
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10569
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]
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}
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]
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},
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{
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"gtc": "/work/omni/data/6268201099/6268201099_R02C01.gtc",
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"ok": false,
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"n_diff": 1,
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"n_missing": 7043,
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"vendor_zero": 7042,
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"swapped": 0,
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"ours_missing_vendor_nonzero": 1,
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"vendor_zero_ours_present": 0,
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"controls_equal": true,
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"examples": [
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{
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"locus": "rs17133206",
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"assay": 0,
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"ours": [
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0,
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0
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],
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"vendor": [
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0,
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1827
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]
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}
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]
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}
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],
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"egt": {
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"num_records": 2450000,
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"dbv": 7,
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"extra_floats": 15,
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"record_mismatches": 0
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},
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"bpm_csv_problems": [],
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"gtc_vs_bpm_num_snps": [
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2450000,
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2450000
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],
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"gtc_transforms_vs_bins": [
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51,
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51
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],
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"seconds": 2074.2,
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"passed": false
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}
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