kemal
368c97b9aa
- pyproject (uv/hatch, ruff, mypy strict, pytest markers), MIT LICENSE, THIRD_PARTY_NOTICES with verbatim BSD-2 (BeadArrayFiles) and MIT (gtc2vcf) - CI workflow for Gitea/GitHub Actions: lint, type check, unit tests - fetch_data.sh p0 now fetches the GSA v4 PGx demo IDATs (the GDA "Demo 36" bundle is a GenomeStudio project), unpacks archives, fixes pipefail bug - make_oracle_gtcs.sh builds bcftools + gtc2vcf and writes oracle GTCs - plan §17: corrected P0 dataset table
26 lines
669 B
YAML
26 lines
669 B
YAML
# Runs on Gitea Actions (reads .github/workflows) and GitHub Actions.
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name: ci
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on:
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push:
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pull_request:
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jobs:
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test:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python: ["3.12", "3.13"]
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steps:
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- uses: actions/checkout@v4
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- uses: astral-sh/setup-uv@v5
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with:
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python-version: ${{ matrix.python }}
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- name: Install
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run: uv venv && uv pip install -e ".[dev]"
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- name: Lint
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run: uv run ruff check src tests && uv run ruff format --check src tests
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- name: Type check
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run: uv run mypy
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- name: Unit tests (no downloaded data needed)
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run: uv run pytest tests/unit -q
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