kemalandClaude Opus 5.5
92416397fe
scripts/build_dist.sh: sdist + pure wheel + manylinux_2_28 kernel wheels (maturin --zig,
both architectures). Dockerfile (multi-stage, kernels included, non-root user).
packaging/conda/{simurg,simurg-core}. scripts/p10/digest.py: platform-independent content
digests of GTC/VCF/summary outputs. Cloud task p10 installs the artifacts on a fresh
Ubuntu VM and runs the tutorial with pip, Docker and conda installs. trial.sh picks the
arm64/amd64 image from the instance type and can run instances in parallel (PARALLEL=1).
Licence files ship in both wheels; Rust crate notices added.
Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01814GKVzZVL3FuF3DeiZXhv
49 lines
1.0 KiB
YAML
49 lines
1.0 KiB
YAML
# conda recipe for SimurgArray (pure Python). Build from a checkout:
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# conda build packaging/conda/simurg -c conda-forge
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{% set version = load_file_regex(load_file="src/simurg/__init__.py", regex_pattern='__version__ = "([^"]+)"', from_recipe_dir=False).group(1) %}
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package:
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name: simurg
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version: {{ version }}
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source:
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path: ../../..
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build:
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noarch: python
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number: 0
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script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vv
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entry_points:
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- simurg = simurg.cli.main:app
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requirements:
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host:
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- python >=3.12
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- pip
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- hatchling >=1.27
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run:
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- python >=3.12
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- numpy >=1.26
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- typer >=0.12
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- rich >=13
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- pyyaml >=6
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- pyarrow >=15
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- openpyxl >=3.1
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run_constrained:
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- simurg-core =={{ version }}
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test:
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imports:
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- simurg
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- simurg.cli.main
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commands:
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- simurg --version
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- simurg --help
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about:
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summary: Research toolkit for Illumina Infinium genotyping BeadChip data (IDAT to GTC, QC, VCF, PLINK)
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license: MIT
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license_file:
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- LICENSE
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- THIRD_PARTY_NOTICES.md
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