Commit Graph
2 Commits
Author SHA1 Message Date
kemal da61c7b9fd Prepare for public release on Gitea: simurgarray package names, community files, Gitea templates, pseudonymised P6 probe names
ci / test (3.13) (push) Successful in 4m23s
ci / test (3.12) (push) Successful in 4m26s
2026-09-30 12:09:13 +01:00
kemal d625ef23c3 P6 validated against GTCtoVCF too: zero unexplained genotype differences
- GTCtoVCF (Apache-2.0, 36 GSA samples, merged sites): 23.66 M identical calls; every difference named
  (intensity-only probes merged by the oracle, its opposite-strand indel bug EDGE-012, normalisation-based
  grouping, OUT-018 ploidy); indel representations identical, including 144 gtc2vcf cannot resolve
- validate_p6_vcf.py: rule-based categories (--bpm for [I/D]/[D/I] detection)
- docs: validation P6 complete, README status
2026-09-28 13:20:44 +01:00