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P2 validated on 2141 vendor GTCs (1000 Genomes Omni2.5)

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Raw X/Y and controls assembled from IDATs equal the vendor GTC arrays for
2138/2141 samples x 2.45M loci; 3 single-locus differences are recorded
as K-009 (probable per-channel missing rule in AutoCall 1.6.2.2). Channel
order X=Red confirmed (U1). `simurg ingest` processed all 2141 samples in
19 min (I/O-bound). AWS run cost ~$0.34 and left no resources.
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kemal committed 2026-09-27 22:19:28 +01:00
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README.md
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@@ -9,8 +9,9 @@ Personal research toolkit for Illumina Infinium genotyping BeadChip data
## Status
Phases **P0 (setup)** and **P1 (file parsers)** are complete — see `docs/validation/P1.md`.
Available commands: `simurg version`, `simurg inspect <files…> [--json]`.
Phases **P0 (setup)**, **P1 (file parsers)** and **P2 (canonical model, raw X/Y)** are complete — see
`docs/validation/`. Validated on 2141 vendor GTCs of the 1000 Genomes Omni2.5 set.
Available commands: `simurg version`, `simurg inspect <files…> [--json]`, `simurg ingest`.
## Quick start