Prepare for public release on Gitea: simurgarray package names, community files, Gitea templates, pseudonymised P6 probe names
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kemal committed 2026-09-30 12:09:13 +01:00
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@@ -39,7 +39,7 @@ A per-locus diagnosis on chr22 compared our trained clusters, the vendor cluster
- **2-cluster loci were the problem.** There, v1 made 1418 errors against the vendor's 186.
- **The cause was the fixed θ windows.** Many loci are compressed or asymmetric in θ; for example the vendor file
has AA 0.05 / AB 0.27 / BB 0.45, or AA 0.37 / AB 0.68 / BB 0.96. With fixed windows such loci were mislabelled:
GSA-rs2003814 (truth 14 AB + 66 BB) was clustered as AA + AB.
rs2003814 (truth 14 AB + 66 BB) was clustered as AA + AB.
v2 (`src/simurg/train/clusters.py`) replaces this with: