Release 1.1.0: compiled kernels (P9) and packaging (P10)

docs/user_guide.md

@@ -1,4 +1,4 @@
-# SimurgArray user guide (v1.0)
+# SimurgArray user guide (v1.1)
 
 SimurgArray turns Illumina Infinium genotyping BeadChip scans (IDAT files) into genotype calls, QC tables and
 reports, VCF/BCF and PLINK files. It is a personal, non-commercial **research** tool — not for clinical or
@@ -24,7 +24,7 @@ uv venv && uv pip install -e .          # add ".[dev]" for tests and linters
 ```bash
 curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y --profile minimal   # Rust (needs a C linker, e.g. gcc)
 uv pip install ./rust/simurg-core
-.venv/bin/python -c "from simurg._core import backend; print(backend())"                   # rust 1.0.0
+.venv/bin/python -c "from simurg._core import backend; print(backend())"                   # rust 1.1.0
 ```
 
 Without them the same code runs in pure Python/NumPy; `SIMURG_PURE_PYTHON=1` forces that path.
@@ -33,15 +33,15 @@ Without them the same code runs in pure Python/NumPy; `SIMURG_PURE_PYTHON=1` for
 `manylinux_2_28` kernel wheels for x86_64 and aarch64, glibc ≥ 2.28):
 
 ```bash
-python3 -m venv simurg-env && simurg-env/bin/pip install simurg-1.0.0-py3-none-any.whl \
-    simurg_core-1.0.0-cp312-abi3-manylinux_2_28_$(uname -m).whl        # the second wheel is optional
+python3 -m venv simurg-env && simurg-env/bin/pip install simurg-1.1.0-py3-none-any.whl \
+    simurg_core-1.1.0-cp312-abi3-manylinux_2_28_$(uname -m).whl        # the second wheel is optional
 ```
 
 **Docker** (image ≈ 550 MB, kernels included, runs as a non-root user; data stay in the mounted folder):
 
 ```bash
-docker build -t simurg:1.0.0 .
-docker run --rm --user "$(id -u):$(id -g)" -v "$PWD":/work simurg:1.0.0 \
+docker build -t simurg:1.1.0 .
+docker run --rm --user "$(id -u):$(id -g)" -v "$PWD":/work simurg:1.1.0 \
     genotype --bpm M.bpm --egt C.egt --idats idats --out run/gtc
 ```