P1 validated on 1000 Genomes Omni2.5 (2141 vendor GTCs + IDATs)

All 2141 vendor-written GTC v3 files match BeadArrayFiles field by field
and re-encode byte-identically; all IDAT pairs parse; the 2.45M-locus BPM,
dbv-7 EGT and CSV manifest agree with BeadArrayFiles and each other.
Run on a self-destructing AWS spot instance (42 min, ~$0.20).
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kemal committed 2026-09-27 20:22:35 +01:00
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{
"root": "/work/omni/data",
"started": "2026-09-27T19:00:42Z",
"n_gtc": 2141,
"n_idat_pairs": 2141,
"unpaired_idats": 0,
"gtc_ok": 2141,
"gtc_roundtrip_identical": 2141,
"gtc_versions": [
3
],
"gtc_autocall_versions": [
"1.6.2.2"
],
"gtc_failures": [],
"gtc_roundtrip_failures": [],
"idat_ok": 2141,
"idat_failures": [],
"idat_midblock_itemsizes": [
4
],
"idat_chip_types": [
"BeadChip 4x10"
],
"bpm": {
"num_loci": 2450000,
"names": true,
"snps": true,
"chroms": true,
"map_infos": true,
"address_a": true,
"assay_types": true,
"normalization_lookups": true,
"n_bins": 51
},
"egt": {
"num_records": 2450000,
"dbv": 7,
"extra_floats": 15,
"record_mismatches": 0
},
"bpm_csv_problems": [],
"gtc_vs_bpm_num_snps": [
2450000,
2450000
],
"gtc_transforms_vs_bins": [
51,
51
],
"seconds": 1098.7,
"passed": true
}