P10 (WIP): release build script, Dockerfile, conda recipes, fresh-VM acceptance task
ci / test (3.12) (push) Failing after 8s
ci / test (3.13) (push) Failing after 10s

scripts/build_dist.sh: sdist + pure wheel + manylinux_2_28 kernel wheels (maturin --zig,
both architectures). Dockerfile (multi-stage, kernels included, non-root user).
packaging/conda/{simurg,simurg-core}. scripts/p10/digest.py: platform-independent content
digests of GTC/VCF/summary outputs. Cloud task p10 installs the artifacts on a fresh
Ubuntu VM and runs the tutorial with pip, Docker and conda installs. trial.sh picks the
arm64/amd64 image from the instance type and can run instances in parallel (PARALLEL=1).
Licence files ship in both wheels; Rust crate notices added.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01814GKVzZVL3FuF3DeiZXhv
This commit is contained in:
kemalandClaude Opus 5.5 committed 2026-09-28 22:41:56 +01:00
1 parent ed4895516d
commit 92416397fe
13 files changed
+403 -5

No files matched your search

+21
View File
@@ -0,0 +1,21 @@
MIT License
Copyright (c) 2026 Kemal Yaylali
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
+6
View File
@@ -0,0 +1,6 @@
simurg-core: optional compiled kernels of SimurgArray (MIT, see LICENSE).
The kernels port numerics that SimurgArray's pure-Python modules port from gtc2vcf (MIT, (C) Giulio Genovese) and
Illumina BeadArrayFiles (BSD-2-Clause, (C) 2020 Illumina); full notices: THIRD_PARTY_NOTICES.md of SimurgArray.
The binary statically links PyO3, rust-numpy, ndarray and their dependencies (MIT / Apache-2.0 / BSD-2-Clause);
`cargo tree` lists them and each crate's licence ships with its source on crates.io.
+2 -1
View File
@@ -6,7 +6,8 @@ build-backend = "maturin"
name = "simurg-core"
description = "Compiled kernels for SimurgArray (optional; the pure-Python paths give identical results)"
requires-python = ">=3.12"
license = { text = "MIT" }
license = "MIT"
license-files = ["LICENSE", "NOTICE"]
dependencies = ["numpy>=1.26"]
dynamic = ["version"]