P10 (WIP): release build script, Dockerfile, conda recipes, fresh-VM acceptance task

scripts/build_dist.sh: sdist + pure wheel + manylinux_2_28 kernel wheels (maturin --zig, both architectures). Dockerfile (multi-stage, kernels included, non-root user). packaging/conda/{simurg,simurg-core}. scripts/p10/digest.py: platform-independent content digests of GTC/VCF/summary outputs. Cloud task p10 installs the artifacts on a fresh Ubuntu VM and runs the tutorial with pip, Docker and conda installs. trial.sh picks the arm64/amd64 image from the instance type and can run instances in parallel (PARALLEL=1). Licence files ship in both wheels; Rust crate notices added. Co-Authored-By: Claude Opus 5.5 <[email protected]> Claude-Session: https://claude.ai/code/session_01814GKVzZVL3FuF3DeiZXhv
2026-09-28 22:41:56 +01:00
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+# conda recipe for SimurgArray (pure Python). Build from a checkout:
+#   conda build packaging/conda/simurg -c conda-forge
+{% set version = load_file_regex(load_file="src/simurg/__init__.py", regex_pattern='__version__ = "([^"]+)"', from_recipe_dir=False).group(1) %}
+
+package:
+  name: simurg
+  version: {{ version }}
+
+source:
+  path: ../../..
+
+build:
+  noarch: python
+  number: 0
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vv
+  entry_points:
+    - simurg = simurg.cli.main:app
+
+requirements:
+  host:
+    - python >=3.12
+    - pip
+    - hatchling >=1.27
+  run:
+    - python >=3.12
+    - numpy >=1.26
+    - typer >=0.12
+    - rich >=13
+    - pyyaml >=6
+    - pyarrow >=15
+    - openpyxl >=3.1
+  run_constrained:
+    - simurg-core =={{ version }}
+
+test:
+  imports:
+    - simurg
+    - simurg.cli.main
+  commands:
+    - simurg --version
+    - simurg --help
+
+about:
+  summary: Research toolkit for Illumina Infinium genotyping BeadChip data (IDAT to GTC, QC, VCF, PLINK)
+  license: MIT
+  license_file:
+    - LICENSE
+    - THIRD_PARTY_NOTICES.md