P10 complete: packaging verified on fresh x86_64 and aarch64 VMs
Wheels (pure + manylinux_2_28 kernels), sdist, Docker image and conda packages built and installed on fresh Ubuntu 24.04 machines; 225 unit tests pass against the installed package; the tutorial runs with pip (with and without kernels); GTC/VCF content digests are identical across pip, Docker and conda on both architectures and equal to the Pi's run. docs/validation/P10.md; guide: install from wheels, Docker, conda; exit code 141. Co-Authored-By: Claude Opus 5.5 <[email protected]> Claude-Session: https://claude.ai/code/session_01814GKVzZVL3FuF3DeiZXhv
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@@ -23,7 +23,8 @@ differential-testing harness. Validation (`docs/validation/`):
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Commands: `simurg inspect`, `ingest`, `normalize`, `genotype`, `qc controls|samples|contamination|relatedness|loci|report|suggest-thresholds`,
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`gtc-to-vcf`, `export plink|bedgraph|finalreport|locus-summary`, `compare`. **User guide: `docs/user_guide.md`**;
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worked example: `examples/gsa_demo.sh`. P9 (performance) is done: optional Rust kernels, byte-identical outputs,
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~80 GSA samples/min per server core (`docs/validation/P9.md`). Next (plan §18): P10 packaging, then v2 modules
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~80 GSA samples/min per server core (`docs/validation/P9.md`). P10 (packaging) is done: wheels, Docker image and
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conda recipes, verified on fresh x86_64 and aarch64 machines (`docs/validation/P10.md`). Next (plan §18): v2 modules
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(cluster training, CN/LOH, PGx).
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## Quick start
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