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Release 2.0.0: v2 modules (ArrayTrain, CN/LOH, PGx, methylation QC)
ci / test (3.13) (push) Failing after 30s
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ci / test (3.12) (push) Failing after 31s
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User guide: ArrayTrain section, v2 commands in the table, v2 accuracy rows,
updated limitations. README status for v2.0.0. Version 2.0.0 (Python package);
the Rust kernels are unchanged and stay simurg_core 1.1.0. uv.lock committed
(uv lock --check clean).

Full suite on the Pi, file by file under the memory guard: 29 files exit 0
(unit: 282 passed), ruff and mypy clean.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01814GKVzZVL3FuF3DeiZXhv
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kemalandClaude Opus 5.5 committed 2026-09-30 06:24:12 +01:00
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commit 6a483cdf5c
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Dockerfile
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# SimurgArray container: the `simurg` CLI with the compiled kernels.
# docker build -t simurg:1.1.0 .
# docker run --rm -v "$PWD":/work simurg:1.1.0 genotype --bpm M.bpm --egt C.egt --idats idats --out run/gtc
# docker build -t simurg:2.0.0 .
# docker run --rm -v "$PWD":/work simurg:2.0.0 genotype --bpm M.bpm --egt C.egt --idats idats --out run/gtc
# Inputs and outputs live in the mounted /work folder; the image holds no data.
ARG PYTHON=3.12