kemal/SimurgArray
1
0 Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

sesame oracle: compare without bead-count masking on both sides

Browse Source
This commit is contained in:
kemal committed 2026-09-29 00:29:25 +01:00
1 parent 1aa9459525
commit 3a816a1c44
2 files changed
+5 -2
Download Patch File Download Diff File Expand all files Collapse all files

No files matched your search

scripts/v2/methyl_oracle_compare.py
+2 -1
View File
@@ -36,7 +36,8 @@ def main() -> int:
pos = {p: i for i, p in enumerate(man.probe_ids)}
res = {}
for prefix in a.prefixes:
s = sig.assemble(read_idat(prefix + "_Grn.idat"), read_idat(prefix + "_Red.idat"), man)
# min_beads=0: the oracle runs without bead-count masking (see sesame_oracle.R)
s = sig.assemble(read_idat(prefix + "_Grn.idat"), read_idat(prefix + "_Red.idat"), man, min_beads=0)
p = sig.detection_p(s)
n, fg, fr = sig.noob(s)
b = sig.beta_values(n)