P10 (WIP): release build script, Dockerfile, conda recipes, fresh-VM acceptance task

scripts/build_dist.sh: sdist + pure wheel + manylinux_2_28 kernel wheels (maturin --zig,
both architectures). Dockerfile (multi-stage, kernels included, non-root user).
packaging/conda/{simurg,simurg-core}. scripts/p10/digest.py: platform-independent content
digests of GTC/VCF/summary outputs. Cloud task p10 installs the artifacts on a fresh
Ubuntu VM and runs the tutorial with pip, Docker and conda installs. trial.sh picks the
arm64/amd64 image from the instance type and can run instances in parallel (PARALLEL=1).
Licence files ship in both wheels; Rust crate notices added.
This commit is contained in:
kemal committed 2026-09-28 22:41:56 +01:00
1 parent adf6acd2d0
commit 349be7a43c
13 files changed
+403 -5

No files matched your search

+48
View File
@@ -0,0 +1,48 @@
# conda recipe for SimurgArray (pure Python). Build from a checkout:
# conda build packaging/conda/simurg -c conda-forge
{% set version = load_file_regex(load_file="src/simurg/__init__.py", regex_pattern='__version__ = "([^"]+)"', from_recipe_dir=False).group(1) %}
package:
name: simurg
version: {{ version }}
source:
path: ../../..
build:
noarch: python
number: 0
script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vv
entry_points:
- simurg = simurg.cli.main:app
requirements:
host:
- python >=3.12
- pip
- hatchling >=1.27
run:
- python >=3.12
- numpy >=1.26
- typer >=0.12
- rich >=13
- pyyaml >=6
- pyarrow >=15
- openpyxl >=3.1
run_constrained:
- simurg-core =={{ version }}
test:
imports:
- simurg
- simurg.cli.main
commands:
- simurg --version
- simurg --help
about:
summary: Research toolkit for Illumina Infinium genotyping BeadChip data (IDAT to GTC, QC, VCF, PLINK)
license: MIT
license_file:
- LICENSE
- THIRD_PARTY_NOTICES.md