v2 CN: synthetic implant evaluation (CYTO-022); reference GTC discovery follows symlinks

216 implanted events in 22 synthetic GSA samples (4 replicates per kind x fraction x size; reference model from 30 other samples): constitutional DEL/DUP 16/16 at 5-20 Mb, mosaic loss/gain/CN-LOH at 15 % / 5 Mb 12/12.
2026-09-29 01:30:07 +01:00
1 parent e76b87939b
commit 2ad3a044a0
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+{
+ "events": 216,
+ "detected": 126,
+ "table": {
+  "MDEL f=0.10": {
+   "5 Mb": "1/4",
+   "20 Mb": "3/4",
+   "1 Mb": "1/4"
+  },
+  "MLOH f=0.10": {
+   "5 Mb": "0/4",
+   "20 Mb": "0/4",
+   "1 Mb": "0/4"
+  },
+  "MDUP f=0.20": {
+   "1 Mb": "4/4",
+   "20 Mb": "4/4",
+   "5 Mb": "3/4"
+  },
+  "MLOH f=0.15": {
+   "1 Mb": "0/4",
+   "5 Mb": "4/4",
+   "20 Mb": "4/4"
+  },
+  "MLOH f=0.30": {
+   "1 Mb": "0/4",
+   "20 Mb": "4/4",
+   "5 Mb": "2/4"
+  },
+  "DEL": {
+   "1 Mb": "4/4",
+   "5 Mb": "4/4",
+   "20 Mb": "4/4"
+  },
+  "MLOH f=0.20": {
+   "1 Mb": "0/4",
+   "5 Mb": "4/4",
+   "20 Mb": "4/4"
+  },
+  "MLOH f=0.05": {
+   "1 Mb": "0/4",
+   "5 Mb": "0/4",
+   "20 Mb": "0/4"
+  },
+  "MDEL f=0.20": {
+   "1 Mb": "4/4",
+   "20 Mb": "4/4",
+   "5 Mb": "3/4"
+  },
+  "MDEL f=0.30": {
+   "20 Mb": "4/4",
+   "5 Mb": "4/4",
+   "1 Mb": "4/4"
+  },
+  "MDUP f=0.10": {
+   "20 Mb": "2/4",
+   "1 Mb": "0/4",
+   "5 Mb": "2/4"
+  },
+  "MDUP f=0.30": {
+   "5 Mb": "4/4",
+   "20 Mb": "4/4",
+   "1 Mb": "4/4"
+  },
+  "DUP": {
+   "1 Mb": "2/4",
+   "20 Mb": "4/4",
+   "5 Mb": "4/4"
+  },
+  "MDEL f=0.05": {
+   "5 Mb": "0/4",
+   "20 Mb": "0/4",
+   "1 Mb": "0/4"
+  },
+  "LOH": {
+   "5 Mb": "3/4",
+   "20 Mb": "4/4",
+   "1 Mb": "0/4"
+  },
+  "MDUP f=0.15": {
+   "1 Mb": "1/4",
+   "5 Mb": "4/4",
+   "20 Mb": "4/4"
+  },
+  "MDEL f=0.15": {
+   "20 Mb": "4/4",
+   "5 Mb": "4/4",
+   "1 Mb": "3/4"
+  },
+  "MDUP f=0.05": {
+   "5 Mb": "0/4",
+   "1 Mb": "0/4",
+   "20 Mb": "0/4"
+  }
+ },
+ "calls_total": 564
+}