Lint fixes in validate_p1_large.py
Co-Authored-By: Claude Opus 5.5 <[email protected]> Claude-Session: https://claude.ai/code/session_01814GKVzZVL3FuF3DeiZXhv
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@@ -78,7 +78,7 @@ def check_gtc(path: str) -> dict[str, Any]:
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if [tuple(float(v) for v in t) for t in xf_b] != xf_g:
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if [tuple(float(v) for v in t) for t in xf_b] != xf_g:
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res["diffs"].append("normalization_transforms")
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res["diffs"].append("normalization_transforms")
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res["ok"] = not res["diffs"]
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res["ok"] = not res["diffs"]
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except Exception as e: # noqa: BLE001 - report everything
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except Exception as e:
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res.update(ok=False, error=f"{type(e).__name__}: {e}", trace=traceback.format_exc(limit=3))
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res.update(ok=False, error=f"{type(e).__name__}: {e}", trace=traceback.format_exc(limit=3))
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return res
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return res
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@@ -98,7 +98,7 @@ def check_idat_pair(args: tuple[str, str]) -> dict[str, Any]:
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scan=g.scan_time_iso,
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scan=g.scan_time_iso,
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name_ok=(g.barcode in Path(grn).name),
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name_ok=(g.barcode in Path(grn).name),
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)
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)
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except Exception as e: # noqa: BLE001
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except Exception as e:
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res.update(ok=False, error=f"{type(e).__name__}: {e}")
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res.update(ok=False, error=f"{type(e).__name__}: {e}")
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return res
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return res
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@@ -162,7 +162,7 @@ def main() -> int:
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"address_a": m.address_a.tolist() == b.addresses,
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"address_a": m.address_a.tolist() == b.addresses,
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"assay_types": m.assay_types.tolist() == b.assay_types,
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"assay_types": m.assay_types.tolist() == b.assay_types,
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"normalization_lookups": m.normalization_lookups().tolist() == b.normalization_lookups,
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"normalization_lookups": m.normalization_lookups().tolist() == b.normalization_lookups,
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"n_bins": int(len(np.unique(m.norm_bin_ids()))),
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"n_bins": len(np.unique(m.norm_bin_ids())),
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}
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}
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e = read_egt(a.egt)
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e = read_egt(a.egt)
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with open(a.egt, "rb") as fh:
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with open(a.egt, "rb") as fh:
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