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PGx: CYP2D6 structures from sub-region CN — *68+*4, *36+*10, *13 (PGX-013/018)
ci / test (3.12) (push) Failing after 11s
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ci / test (3.13) (push) Failing after 14s
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Sub-region CNs (p5, intron 2, exon 9) resolve full copies and *36/*68/*13 units; candidates carry the
tandem names, background alleles, and CPIC activity sums. GeT-RM: CYP2D6 13/15 top (NA12878 *3/*68+*4 and
NA11832 *1/*68+*4 exact), 15/15 within feasible; all genes 132/144.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01814GKVzZVL3FuF3DeiZXhv
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kemalandClaude Opus 5.5 committed 2026-09-29 16:29:54 +01:00
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commit 1428535e91
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scripts/pgx/validate_star_getrm.py
+1 -1
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@@ -67,7 +67,7 @@ def truth_alternatives(text: str) -> list[list[set[str]]]:
def matches(call: tuple[str, str], truth: list[list[set[str]]]) -> bool:
a, b = (re.sub(r"x\d+$", "", x) for x in call)
a, b = (re.sub(r"x\d+$", "", x.split("+")[-1]) for x in call) # tandem "*68+*4" → core "*4"
return any((a in t[0] and b in t[1]) or (a in t[1] and b in t[0]) for t in truth)