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P3 validated: normalization bit-identical on 2141 vendor GTCs
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Normalization 1.1.2 reproduces all 109,191 bins of the 1000 Genomes
Omni2.5 GTCs (AutoCall 1.6.2.2) with 0 ULP difference, reserved fields
included; 1.2.0 and 1.1.2 are bit-identical to the no-FMA gtc2vcf oracle
on 36 GSA samples. AWS run: 33 min, ~$0.15, no resources left.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01814GKVzZVL3FuF3DeiZXhv
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kemalandClaude Opus 5.5 committed 2026-09-27 23:41:43 +01:00
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README.md
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@@ -9,9 +9,10 @@ Personal research toolkit for Illumina Infinium genotyping BeadChip data
## Status
Phases **P0 (setup)**, **P1 (file parsers)** and **P2 (canonical model, raw X/Y)** are complete — see
`docs/validation/`. Validated on 2141 vendor GTCs of the 1000 Genomes Omni2.5 set.
Available commands: `simurg version`, `simurg inspect <files…> [--json]`, `simurg ingest`.
Phases **P0 (setup)**, **P1 (file parsers)**, **P2 (canonical model, raw X/Y)** and **P3 (normalization)** are
complete — see `docs/validation/`. Each is validated on 2141 vendor GTCs of the 1000 Genomes Omni2.5 set
(normalization transforms bit-identical).
Available commands: `simurg version`, `simurg inspect <files…> [--json]`, `simurg ingest`, `simurg normalize`.
## Quick start