P10 (WIP): release build script, Dockerfile, conda recipes, fresh-VM acceptance task
scripts/build_dist.sh: sdist + pure wheel + manylinux_2_28 kernel wheels (maturin --zig,
both architectures). Dockerfile (multi-stage, kernels included, non-root user).
packaging/conda/{simurg,simurg-core}. scripts/p10/digest.py: platform-independent content
digests of GTC/VCF/summary outputs. Cloud task p10 installs the artifacts on a fresh
Ubuntu VM and runs the tutorial with pip, Docker and conda installs. trial.sh picks the
arm64/amd64 image from the instance type and can run instances in parallel (PARALLEL=1).
Licence files ship in both wheels; Rust crate notices added.
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@@ -1,14 +1,25 @@
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[build-system]
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requires = ["hatchling>=1.24"]
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requires = ["hatchling>=1.27"]
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build-backend = "hatchling.build"
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[project]
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name = "simurg"
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description = "SimurgArray: open research toolkit for Illumina Infinium genotyping BeadChip data"
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readme = "README.md"
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license = { text = "MIT" }
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license = "MIT"
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license-files = ["LICENSE", "THIRD_PARTY_NOTICES.md"]
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requires-python = ">=3.12"
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authors = [{ name = "Kemal Yaylali" }]
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keywords = ["genotyping", "microarray", "infinium", "idat", "gtc", "vcf", "bioinformatics"]
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classifiers = [
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"Development Status :: 5 - Production/Stable",
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"Intended Audience :: Science/Research",
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"Operating System :: POSIX :: Linux",
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"Operating System :: MacOS",
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"Programming Language :: Python :: 3.12",
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"Programming Language :: Python :: 3.13",
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"Topic :: Scientific/Engineering :: Bio-Informatics",
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]
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dynamic = ["version"]
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dependencies = [
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"numpy>=1.26", # all numerics
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