P10 (WIP): release build script, Dockerfile, conda recipes, fresh-VM acceptance task

scripts/build_dist.sh: sdist + pure wheel + manylinux_2_28 kernel wheels (maturin --zig,
both architectures). Dockerfile (multi-stage, kernels included, non-root user).
packaging/conda/{simurg,simurg-core}. scripts/p10/digest.py: platform-independent content
digests of GTC/VCF/summary outputs. Cloud task p10 installs the artifacts on a fresh
Ubuntu VM and runs the tutorial with pip, Docker and conda installs. trial.sh picks the
arm64/amd64 image from the instance type and can run instances in parallel (PARALLEL=1).
Licence files ship in both wheels; Rust crate notices added.
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kemal committed 2026-09-28 22:41:56 +01:00
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[build-system]
requires = ["hatchling>=1.24"]
requires = ["hatchling>=1.27"]
build-backend = "hatchling.build"
[project]
name = "simurg"
description = "SimurgArray: open research toolkit for Illumina Infinium genotyping BeadChip data"
readme = "README.md"
license = { text = "MIT" }
license = "MIT"
license-files = ["LICENSE", "THIRD_PARTY_NOTICES.md"]
requires-python = ">=3.12"
authors = [{ name = "Kemal Yaylali" }]
keywords = ["genotyping", "microarray", "infinium", "idat", "gtc", "vcf", "bioinformatics"]
classifiers = [
"Development Status :: 5 - Production/Stable",
"Intended Audience :: Science/Research",
"Operating System :: POSIX :: Linux",
"Operating System :: MacOS",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13",
"Topic :: Scientific/Engineering :: Bio-Informatics",
]
dynamic = ["version"]
dependencies = [
"numpy>=1.26", # all numerics