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119 workflow runs

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v1.0.0: user guide, examples, changelog

ci #29:Commit 874aeaef61 pushed by kemal

v1.0.0

2026-09-28 19:38:47 +00:00

19s

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v1.0.0: user guide, examples, changelog

ci #28:Commit 874aeaef61 pushed by kemal

main

2026-09-28 19:38:40 +00:00

12s

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P8 complete: scientific validation on GSE165845 vs NYGC 30x and GIAB HG001

ci #27:Commit d0f8c3a144 pushed by kemal

main

2026-09-28 18:47:48 +00:00

11s

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P8 cloud task: stream NYGC VCFs through bcftools instead of downloading

ci #26:Commit 9f36f6443b pushed by kemal

main

2026-09-28 18:06:53 +00:00

10s

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cloud: optional AZ for spot launches

ci #25:Commit 60a7ae5ada pushed by kemal

main

2026-09-28 16:44:39 +00:00

11s

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P8: GSE165845 validation scripts (prepare, §16.5 metrics) and cloud task

ci #24:Commit 70c36446a0 pushed by kemal

main

2026-09-28 16:43:43 +00:00

10s

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P7: differential-testing harness (simurg compare) and nightly run on the Pi

ci #23:Commit cd86681742 pushed by kemal

main

2026-09-28 16:00:50 +00:00

11s

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P6 complete: optional VCF fields, SNV+indel merging, auxiliary MNV loci, PLINK 2 .pgen

ci #22:Commit 2e8478cc6a pushed by kemal

main

2026-09-28 13:29:58 +00:00

10s

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P6 validated against GTCtoVCF too: zero unexplained genotype differences

ci #21:Commit 63bb40c4e5 pushed by kemal

main

2026-09-28 12:43:08 +00:00

12s

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P6 validated against GTCtoVCF too: zero unexplained genotype differences

ci #20:Commit 0fe3977187 pushed by kemal

main

2026-09-28 12:21:02 +00:00

11s

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P6: gtc-to-vcf (VCF/BCF + indexes), harmonisation, exports (plink, bedgraph, finalreport)

ci #19:Commit df41569f64 pushed by kemal

main

2026-09-28 11:18:09 +00:00

12s

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P5 validated on 2141 1000G samples; control-metric fixes (K-021)

ci #18:Commit d5ec89ff58 pushed by kemal

main

2026-09-28 09:25:45 +00:00

10s

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P5b: self-contained HTML QC report and QC table (simurg qc report)

ci #17:Commit fbc4080a50 pushed by kemal

main

2026-09-28 08:20:37 +00:00

11s

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P5: cloud task for cohort QC validation; configurable gp3 throughput; batched contamination map

ci #16:Commit 56d250c621 pushed by kemal

main

2026-09-28 08:10:16 +00:00

10s

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P5a: QC — control metrics, thresholds, status, contamination, relatedness, locus summary

ci #15:Commit 0c004f6398 pushed by kemal

main

2026-09-28 07:35:29 +00:00

11s

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P4 validated on 2141 vendor GTCs; legacy AutoCall 1.6.2 preset

ci #14:Commit 8b1e5d8dab pushed by kemal

main

2026-09-28 00:22:05 +00:00

9s

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P4: unit tests for calling/BAF/LRR/sex/CLI; vendor validation script

ci #13:Commit eb19ac7f91 pushed by kemal

main

2026-09-27 23:11:02 +00:00

10s

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P4 (WIP): GenCall-equivalent calling, BAF/LRR, sex, GTC v5, simurg genotype

ci #12:Commit febdd121ef pushed by kemal

main

2026-09-27 23:07:51 +00:00

10s

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P3 validated: normalization bit-identical on 2141 vendor GTCs

ci #11:Commit 0cd7eb8aa0 pushed by kemal

main

2026-09-27 22:41:55 +00:00

10s

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P3: vectorised nearest-neighbour search; task-driven cloud trials

ci #10:Commit 268457ba8e pushed by kemal

main

2026-09-27 21:57:17 +00:00

10s

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P3: normalization fit (1.2.0 and 1.1.2), apply, polar, simurg normalize

ci #9:Commit 314fdc40d1 pushed by kemal

main

2026-09-27 21:51:20 +00:00

10s

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P2 validated on 2141 vendor GTCs (1000 Genomes Omni2.5)

ci #8:Commit 5c93e194e0 pushed by kemal

main

2026-09-27 21:19:44 +00:00

10s

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P2 validation: oracle test and large-scale raw X/Y check

ci #7:Commit 2e75345a30 pushed by kemal

main

2026-09-27 19:57:59 +00:00

10s

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P2 (WIP): raw X/Y assembly, canonical Parquet model, simurg ingest

ci #6:Commit a4faead6d7 pushed by kemal

main

2026-09-27 19:54:21 +00:00

10s

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P1 validated on 1000 Genomes Omni2.5 (2141 vendor GTCs + IDATs)

ci #5:Commit 854fe132cc pushed by kemal

main

2026-09-27 19:22:51 +00:00

10s

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cloud trial: set HOME/PATH for cloud-init, unit tests non-fatal

ci #4:Commit f52313fc93 pushed by kemal

main

2026-09-27 18:37:05 +00:00

10s

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Lint fixes in validate_p1_large.py

ci #3:Commit 150650424c pushed by kemal

main

2026-09-27 18:30:55 +00:00

15s

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Add self-destructing AWS trial and large-scale P1 validation script

ci #2:Commit a9aa6dc080 pushed by kemal

main

2026-09-27 18:30:46 +00:00

13s

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P1: file parsers, sample sheet, discovery, CLI inspect

ci #1:Commit 4357d3deef pushed by kemal

main

2026-09-27 15:56:58 +00:00

12s

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