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108 workflow runs

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v2 CN: synthetic implant evaluation (CYTO-022); reference GTC discovery follows symlinks

ci #48:Commit 88f41314b8 pushed by kemal

main

2026-09-29 00:30:22 +00:00

10s

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v2 CN/LOH (WIP): cn build-model and cn call

ci #47:Commit 3068e84566 pushed by kemal

main

2026-09-29 00:14:09 +00:00

12s

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v2 methylation QC validated on minfiDataEPIC and against sesame (K-026)

ci #46:Commit cb3f5fac58 pushed by kemal

main

2026-09-28 23:42:07 +00:00

10s

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methylation: combine_neg option; oracle compares both background variants and logs sesame's negative controls

ci #45:Commit 86050ef2fc pushed by kemal

main

2026-09-28 23:36:59 +00:00

11s

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sesame oracle: compare without bead-count masking on both sides

ci #44:Commit 916e2589fa pushed by kemal

main

2026-09-28 23:29:43 +00:00

10s

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sesame oracle: cache EPIC annotation up front

ci #43:Commit beaf24cfd1 pushed by kemal

main

2026-09-28 23:23:40 +00:00

10s

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sesame oracle: explicit platform, cache fallback

ci #42:Commit 12503fbc33 pushed by kemal

main

2026-09-28 23:18:33 +00:00

10s

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v2 methylation: sesame oracle scripts and cloud task

ci #41:Commit 2c503d2742 pushed by kemal

main

2026-09-28 23:14:30 +00:00

9s

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v2 methylation control QC (WIP): simurg methyl qc|convert-manifest (MET-001..018)

ci #40:Commit c1c2c30c87 pushed by kemal

main

2026-09-28 23:13:39 +00:00

10s

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Release 1.1.0: compiled kernels (P9) and packaging (P10)

ci #39:Commit 7c0e348033 pushed by kemal

v1.1.0

2026-09-28 22:56:59 +00:00

17s

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Release 1.1.0: compiled kernels (P9) and packaging (P10)

ci #38:Commit 7c0e348033 pushed by kemal

main

2026-09-28 22:56:52 +00:00

11s

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P10 complete: packaging verified on fresh x86_64 and aarch64 VMs

ci #37:Commit 704eb06987 pushed by kemal

main

2026-09-28 22:54:15 +00:00

9s

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CLI: a closed stdout pipe exits 141 silently (was E_INTERNAL); example avoids head under pipefail

ci #36:Commit bc93e00318 pushed by kemal

main

2026-09-28 22:15:03 +00:00

10s

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P10 (WIP): release build script, Dockerfile, conda recipes, fresh-VM acceptance task

ci #35:Commit 92416397fe pushed by kemal

main

2026-09-28 21:42:09 +00:00

10s

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P9 complete: compiled kernels validated (byte-identical, 78-80 GSA samples/min/core), scaling report

ci #34:Commit ed4895516d pushed by kemal

main

2026-09-28 21:33:03 +00:00

10s

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P9: scaling on a RAM disk (bench --work/--clean, cloud task p9b)

ci #33:Commit bd19450364 pushed by kemal

main

2026-09-28 21:04:23 +00:00

10s

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P9 cloud task: install gcc (linker for the Rust build); guide: kernel installation

ci #32:Commit c97aac1a5a pushed by kemal

main

2026-09-28 20:35:56 +00:00

10s

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bench: format

ci #31:Commit 1e4bf3a296 pushed by kemal

main

2026-09-28 20:29:22 +00:00

10s

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P9 (WIP): compiled kernels (rust/simurg-core, PyO3) with bit-identical pure-Python fallback

ci #30:Commit 5bdd41b048 pushed by kemal

main

2026-09-28 20:29:12 +00:00

11s

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v1.0.0: user guide, examples, changelog

ci #29:Commit 874aeaef61 pushed by kemal

v1.0.0

2026-09-28 19:38:47 +00:00

19s

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v1.0.0: user guide, examples, changelog

ci #28:Commit 874aeaef61 pushed by kemal

main

2026-09-28 19:38:40 +00:00

12s

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P8 complete: scientific validation on GSE165845 vs NYGC 30x and GIAB HG001

ci #27:Commit d0f8c3a144 pushed by kemal

main

2026-09-28 18:47:48 +00:00

11s

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P8 cloud task: stream NYGC VCFs through bcftools instead of downloading

ci #26:Commit 9f36f6443b pushed by kemal

main

2026-09-28 18:06:53 +00:00

10s

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cloud: optional AZ for spot launches

ci #25:Commit 60a7ae5ada pushed by kemal

main

2026-09-28 16:44:39 +00:00

11s

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P8: GSE165845 validation scripts (prepare, §16.5 metrics) and cloud task

ci #24:Commit 70c36446a0 pushed by kemal

main

2026-09-28 16:43:43 +00:00

10s

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P7: differential-testing harness (simurg compare) and nightly run on the Pi

ci #23:Commit cd86681742 pushed by kemal

main

2026-09-28 16:00:50 +00:00

11s

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P6 complete: optional VCF fields, SNV+indel merging, auxiliary MNV loci, PLINK 2 .pgen

ci #22:Commit 2e8478cc6a pushed by kemal

main

2026-09-28 13:29:58 +00:00

10s

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P6 validated against GTCtoVCF too: zero unexplained genotype differences

ci #21:Commit 63bb40c4e5 pushed by kemal

main

2026-09-28 12:43:08 +00:00

12s

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P6 validated against GTCtoVCF too: zero unexplained genotype differences

ci #20:Commit 0fe3977187 pushed by kemal

main

2026-09-28 12:21:02 +00:00

11s

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P6: gtc-to-vcf (VCF/BCF + indexes), harmonisation, exports (plink, bedgraph, finalreport)

ci #19:Commit df41569f64 pushed by kemal

main

2026-09-28 11:18:09 +00:00

12s

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