All Workflows ci issue-triage

Management

Job queue

119 workflow runs

Actor

All actors kemal

Status

All status Success Failure Canceled Skipped Waiting Running Blocked Canceling

Branch

All branches main

V2 CN validation: Pi tuning rounds, CYTO-041 effect, common-CNV sensitivity limit (K-027)

ci #59:Commit 1c73f3954b pushed by kemal

main

2026-09-29 10:11:31 +00:00

12s

View workflow file

CN: MF split normalised by per-probe reference BAF noise; genotype-based complete loss (CYTO-041)

ci #58:Commit 662addf5eb pushed by kemal

main

2026-09-29 09:56:39 +00:00

11s

View workflow file

CN: noise-corrected BAF split and complete-loss MF (CYTO-041); Pi tuning harness

ci #57:Commit 19bc6ca986 pushed by kemal

main

2026-09-29 09:30:28 +00:00

12s

View workflow file

pi_run: hard per-job memory cap via a systemd scope (MemoryMax) when the memory cgroup is enabled

ci #56:Commit 8ab8e632b9 pushed by kemal

main

2026-09-29 07:24:45 +00:00

10s

View workflow file

CN: per-probe heterozygous BAF spread from the batch reference; --mosaic-prior/--switch-distance; Pi memory guard

ci #55:Commit 46be8f7ffd pushed by kemal

main

2026-09-29 06:56:25 +00:00

12s

View workflow file

v2 CN: real-data validation vs NYGC 30x SVs (interim), noise gate on normalised LRR (K-027)

ci #54:Commit 07a4caff51 pushed by kemal

main

2026-09-29 06:42:21 +00:00

11s

View workflow file

test: packaged CN data files

ci #53:Commit 65502eb8e4 pushed by kemal

main

2026-09-29 06:07:17 +00:00

10s

View workflow file

Track the packaged CN data files (the data/ ignore rule matched src/simurg/cn/data)

ci #52:Commit b2e0c09f2a pushed by kemal

main

2026-09-29 06:07:03 +00:00

13s

View workflow file

v2 CN: truth validation script (NYGC 30x SV freeze V3) and cloud task cnv

ci #51:Commit a528ad3549 pushed by kemal

main

2026-09-29 00:40:03 +00:00

11s

View workflow file

v2 CN: cn annotate (JSON report, ISCN 2020, cytobands, genes) and the annotation bundle builder

ci #50:Commit 29c5fbb215 pushed by kemal

main

2026-09-29 00:38:11 +00:00

11s

View workflow file

v2 CN: unit tests (GC windows, PFB, GC-wave, smoothing, HMM DEL/LOH, effective size, thresholds, mask, CLI VCF rules)

ci #49:Commit 33dec15614 pushed by kemal

main

2026-09-29 00:33:10 +00:00

10s

View workflow file

v2 CN: synthetic implant evaluation (CYTO-022); reference GTC discovery follows symlinks

ci #48:Commit 88f41314b8 pushed by kemal

main

2026-09-29 00:30:22 +00:00

10s

View workflow file

v2 CN/LOH (WIP): cn build-model and cn call

ci #47:Commit 3068e84566 pushed by kemal

main

2026-09-29 00:14:09 +00:00

12s

View workflow file

v2 methylation QC validated on minfiDataEPIC and against sesame (K-026)

ci #46:Commit cb3f5fac58 pushed by kemal

main

2026-09-28 23:42:07 +00:00

10s

View workflow file

methylation: combine_neg option; oracle compares both background variants and logs sesame's negative controls

ci #45:Commit 86050ef2fc pushed by kemal

main

2026-09-28 23:36:59 +00:00

11s

View workflow file

sesame oracle: compare without bead-count masking on both sides

ci #44:Commit 916e2589fa pushed by kemal

main

2026-09-28 23:29:43 +00:00

10s

View workflow file

sesame oracle: cache EPIC annotation up front

ci #43:Commit beaf24cfd1 pushed by kemal

main

2026-09-28 23:23:40 +00:00

10s

View workflow file

sesame oracle: explicit platform, cache fallback

ci #42:Commit 12503fbc33 pushed by kemal

main

2026-09-28 23:18:33 +00:00

10s

View workflow file

v2 methylation: sesame oracle scripts and cloud task

ci #41:Commit 2c503d2742 pushed by kemal

main

2026-09-28 23:14:30 +00:00

9s

View workflow file

v2 methylation control QC (WIP): simurg methyl qc|convert-manifest (MET-001..018)

ci #40:Commit c1c2c30c87 pushed by kemal

main

2026-09-28 23:13:39 +00:00

10s

View workflow file

Release 1.1.0: compiled kernels (P9) and packaging (P10)

ci #39:Commit 7c0e348033 pushed by kemal

v1.1.0

2026-09-28 22:56:59 +00:00

17s

View workflow file

Release 1.1.0: compiled kernels (P9) and packaging (P10)

ci #38:Commit 7c0e348033 pushed by kemal

main

2026-09-28 22:56:52 +00:00

11s

View workflow file

P10 complete: packaging verified on fresh x86_64 and aarch64 VMs

ci #37:Commit 704eb06987 pushed by kemal

main

2026-09-28 22:54:15 +00:00

9s

View workflow file

CLI: a closed stdout pipe exits 141 silently (was E_INTERNAL); example avoids head under pipefail

ci #36:Commit bc93e00318 pushed by kemal

main

2026-09-28 22:15:03 +00:00

10s

View workflow file

P10 (WIP): release build script, Dockerfile, conda recipes, fresh-VM acceptance task

ci #35:Commit 92416397fe pushed by kemal

main

2026-09-28 21:42:09 +00:00

10s

View workflow file

P9 complete: compiled kernels validated (byte-identical, 78-80 GSA samples/min/core), scaling report

ci #34:Commit ed4895516d pushed by kemal

main

2026-09-28 21:33:03 +00:00

10s

View workflow file

P9: scaling on a RAM disk (bench --work/--clean, cloud task p9b)

ci #33:Commit bd19450364 pushed by kemal

main

2026-09-28 21:04:23 +00:00

10s

View workflow file

P9 cloud task: install gcc (linker for the Rust build); guide: kernel installation

ci #32:Commit c97aac1a5a pushed by kemal

main

2026-09-28 20:35:56 +00:00

10s

View workflow file

bench: format

ci #31:Commit 1e4bf3a296 pushed by kemal

main

2026-09-28 20:29:22 +00:00

10s

View workflow file

P9 (WIP): compiled kernels (rust/simurg-core, PyO3) with bit-identical pure-Python fallback

ci #30:Commit 5bdd41b048 pushed by kemal

main

2026-09-28 20:29:12 +00:00

11s

View workflow file