kemal
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End-to-end variant interpretation platform for rare genetic disease research: SvelteKit UI, FastAPI + PostgreSQL API, Nextflow/Ensembl VEP pipeline, LightGBM pathogenicity scoring with MLflow, K8s/ArgoCD/GCP infrastructure. Public test data only; no clinical claims.
29 lines
585 B
TOML
29 lines
585 B
TOML
[project]
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name = "rarelens-api"
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version = "0.1.0"
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description = "FastAPI backend for rarelens"
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requires-python = ">=3.12"
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dependencies = [
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"fastapi>=0.115",
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"uvicorn[standard]>=0.30",
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"sqlalchemy[asyncio]>=2.0",
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"asyncpg>=0.29",
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"alembic>=1.13",
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"pydantic>=2.8",
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"pydantic-settings>=2.4",
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"httpx>=0.27",
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"mlflow-skinny>=2.16",
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"lightgbm>=4.5",
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"pandas>=2.2",
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]
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[project.optional-dependencies]
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dev = ["pytest", "pytest-asyncio", "ruff", "mypy", "aiosqlite"]
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[tool.ruff]
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line-length = 100
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target-version = "py312"
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[tool.pytest.ini_options]
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asyncio_mode = "auto"
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