Files
rarelens/.github/workflows/deploy.yml
T
kemal 5463f489a3
ci / api (push) Failing after 10s
ci / terraform (push) Failing after 11s
ci / web (push) Failing after 35s
ci / pipeline (push) Failing after 2m29s
ci / images (api) (push) Skipped
ci / images (ml) (push) Skipped
ci / images (pipeline) (push) Skipped
ci / images (web) (push) Skipped
Initial release: rarelens platform skeleton (AGPL-3.0)
End-to-end variant interpretation platform for rare genetic disease research:
SvelteKit UI, FastAPI + PostgreSQL API, Nextflow/Ensembl VEP pipeline,
LightGBM pathogenicity scoring with MLflow, K8s/ArgoCD/GCP infrastructure.
Public test data only; no clinical claims.
2026-09-11 16:55:35 +01:00

23 lines
787 B
YAML

# GitOps: CI only bumps image tags in the gcp overlay; ArgoCD does the deploy.
name: bump-images
on:
workflow_run:
workflows: [ci]
types: [completed]
branches: [main]
jobs:
bump:
if: ${{ github.event.workflow_run.conclusion == 'success' }}
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: imranismail/setup-kustomize@v2
- run: |
cd infra/k8s/overlays/gcp
for c in api web; do
kustomize edit set image rarelens/$c=europe-west2-docker.pkg.dev/${{ secrets.GCP_PROJECT }}/rarelens/$c:${{ github.event.workflow_run.head_sha }}
done
- uses: stefanzweifel/git-auto-commit-action@v5
with: { commit_message: "chore: bump images to ${{ github.event.workflow_run.head_sha }}" }