Kemal Yaylali
33e788122b
"running" for two and a half minutes tells the user nothing. The job page now shows a spinner, the elapsed time, and the pipeline step Nextflow is actually on. - the API streams the Nextflow output into jobs.log as it arrives, instead of keeping it only when the run dies. Writes are throttled to one every 3s, or immediately when a new process starts, and are skipped for a job that has already finished, so a late line cannot overwrite the loader's result. - web/src/lib/progress.ts formats the elapsed time and picks the latest [PROCESS] line. No percentage: the pipeline cannot honestly estimate one. - the spinner animates only under prefers-reduced-motion: no-preference. Verified on a live run: the page showed "VEP (tiny)" for the duration, then the variant table replaced it on success. Tests: api 53, web 20; ruff, mypy, svelte-check clean.
43 lines
2.6 KiB
CSS
43 lines
2.6 KiB
CSS
/* Palette: pale slate paper, ink navy, and one plum accent reserved for pathogenicity. */
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:root {
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--paper: #f3f5f7;
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--ink: #16243a;
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--ink-soft: #52627a;
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--line: #cfd6df;
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--plum: #7a1f5c;
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--plum-soft: #f0dbe8;
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--amber: #b86a00;
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--mono: 'JetBrains Mono', ui-monospace, monospace;
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--sans: 'Source Sans 3', system-ui, sans-serif;
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}
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html { background: var(--paper); color: var(--ink); font-family: var(--sans); font-size: 17px; }
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body { margin: 0; }
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main { max-width: 1100px; margin: 0 auto; padding: 2.5rem 1.5rem; }
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h1 { font-weight: 600; font-size: 2rem; letter-spacing: -0.01em; margin: 0 0 0.5rem; }
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h2 { font-weight: 600; font-size: 1.25rem; margin: 2rem 0 0.75rem; }
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p.lede { color: var(--ink-soft); max-width: 60ch; margin: 0 0 2rem; }
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a { color: var(--plum); text-underline-offset: 3px; }
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a:focus-visible, button:focus-visible, input:focus-visible, select:focus-visible { outline: 3px solid var(--plum); outline-offset: 2px; }
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button { font: inherit; padding: 0.5rem 1rem; border: 1.5px solid var(--ink); background: var(--ink); color: white; border-radius: 4px; cursor: pointer; }
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button.quiet { background: transparent; color: var(--ink); }
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input, select { font: inherit; padding: 0.45rem 0.6rem; border: 1.5px solid var(--line); border-radius: 4px; background: white; }
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table { width: 100%; border-collapse: collapse; background: white; border: 1px solid var(--line); }
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th, td { text-align: left; padding: 0.55rem 0.75rem; border-bottom: 1px solid var(--line); vertical-align: top; }
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th { font-weight: 600; color: var(--ink-soft); }
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td.coord, td.hgvs { font-family: var(--mono); font-size: 0.85rem; } /* aligned digits matter here */
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.score { display: inline-block; min-width: 3.2rem; text-align: right; padding: 0.1rem 0.4rem; border-radius: 3px; font-variant-numeric: tabular-nums; }
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.score.high { background: var(--plum); color: white; }
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.score.mid { background: var(--plum-soft); color: var(--plum); }
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.empty { padding: 2rem; border: 1.5px dashed var(--line); color: var(--ink-soft); }
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.status { font-weight: 600; }
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.status.failed { color: #9a1b1b; }
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.status.running, .status.queued { color: var(--amber); }
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.progress { display: flex; align-items: center; gap: 0.6rem; color: var(--ink-soft); margin: 0.25rem 0 1rem; }
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.progress .hgvs { font-size: 0.85rem; }
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.spinner { width: 0.9rem; height: 0.9rem; flex: none; border: 2px solid var(--line); border-top-color: var(--plum); border-radius: 50%; }
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@media (prefers-reduced-motion: no-preference) {
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button { transition: background 120ms; }
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.spinner { animation: spin 0.9s linear infinite; }
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}
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@keyframes spin { to { transform: rotate(360deg); } }
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