params {
    vcf        = null
    job_id     = null
    db_url     = null
    outdir     = "results"
    assembly   = "GRCh38"
    vep_cache  = "${projectDir}/cache/vep"     // download once with `vep_install`; or use --offline false
    vep_plugins = "CADD,AlphaMissense"
}

profiles {
    docker { docker.enabled = true }
    gcp {
        process.executor = 'k8s'               // runs inside GKE via Argo; Nextflow k8s executor
        workDir = "gs://${params.bucket}/work"
        google.project = params.project
    }
}

process {
    withName: VEP        { container = 'ensemblorg/ensembl-vep:release_113.0'; cpus = 4; memory = '8 GB' }
    withName: NORMALISE  { container = 'quay.io/biocontainers/bcftools:1.20--h8b25389_0' }
    withName: LOAD_DB    { container = 'ghcr.io/lynchaos/rarelens-loader:latest' }
}