#!/usr/bin/env nextflow
nextflow.enable.dsl = 2

include { NORMALISE } from './modules/normalise'
include { VEP }       from './modules/vep'
include { LOAD_DB }   from './modules/load_db'

workflow {
    if (!params.vcf) error "Provide --vcf"
    vcf_ch = Channel.fromPath(params.vcf, checkIfExists: true)

    NORMALISE(vcf_ch)
    VEP(NORMALISE.out.vcf)
    LOAD_DB(VEP.out.tsv, params.job_id ?: 'local', params.db_url ?: 'none')
}