name: ci
on:
  pull_request:
  push:
    branches: [main]

jobs:
  api:
    runs-on: ubuntu-latest
    services:
      postgres:
        image: postgres:16-alpine
        env: { POSTGRES_USER: rarelens, POSTGRES_PASSWORD: rarelens, POSTGRES_DB: rarelens }
        ports: ["5432:5432"]
        options: --health-cmd "pg_isready -U rarelens" --health-interval 5s --health-retries 10
    steps:
      - uses: actions/checkout@v4
      - uses: astral-sh/setup-uv@v3
      - run: uv pip install --system -e "api[dev]"
      - run: cd api && ruff check . && mypy app
      - run: cd api && pytest -q
        env: { DATABASE_URL: postgresql+asyncpg://rarelens:rarelens@localhost:5432/rarelens }

  web:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: actions/setup-node@v4
        with: { node-version: 22, cache: npm, cache-dependency-path: web/package-lock.json }
      - run: cd web && npm ci && npm run check && npm test && npm run build

  pipeline:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: nf-core/setup-nextflow@v2
      - run: cd pipeline && nextflow run main.nf -profile docker --vcf ../data/example.vcf.gz -stub-run

  terraform:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: hashicorp/setup-terraform@v3
      - run: cd infra/terraform && terraform init -backend=false && terraform fmt -check && terraform validate

  images:
    if: github.ref == 'refs/heads/main'
    needs: [api, web, pipeline]
    runs-on: ubuntu-latest
    permissions: { contents: read, id-token: write }
    strategy:
      matrix: { component: [api, web, pipeline, ml] }
    steps:
      - uses: actions/checkout@v4
      - uses: google-github-actions/auth@v2
        with:
          workload_identity_provider: ${{ secrets.GCP_WIF_PROVIDER }}
          service_account: ${{ secrets.GCP_CI_SA }}
      - run: gcloud auth configure-docker europe-west2-docker.pkg.dev --quiet
      - uses: docker/build-push-action@v6
        with:
          context: ${{ matrix.component }}
          push: true
          tags: europe-west2-docker.pkg.dev/${{ secrets.GCP_PROJECT }}/rarelens/${{ matrix.component }}:${{ github.sha }}