Initial release: rarelens platform skeleton (AGPL-3.0)
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End-to-end variant interpretation platform for rare genetic disease research:
SvelteKit UI, FastAPI + PostgreSQL API, Nextflow/Ensembl VEP pipeline,
LightGBM pathogenicity scoring with MLflow, K8s/ArgoCD/GCP infrastructure.
Public test data only; no clinical claims.
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2026-09-11 16:55:35 +01:00
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# Loader image: pandas + psycopg for LOAD_DB
FROM python:3.12-slim
RUN pip install --no-cache-dir pandas sqlalchemy "psycopg[binary]"
COPY bin/load_db.py /usr/local/bin/load_db.py
RUN chmod +x /usr/local/bin/load_db.py