Initial release: rarelens platform skeleton (AGPL-3.0)

End-to-end variant interpretation platform for rare genetic disease research:
SvelteKit UI, FastAPI + PostgreSQL API, Nextflow/Ensembl VEP pipeline,
LightGBM pathogenicity scoring with MLflow, K8s/ArgoCD/GCP infrastructure.
Public test data only; no clinical claims.

ml/pyproject.toml

@@ -0,0 +1,8 @@
+[project]
+name = "rarelens-ml"
+version = "0.1.0"
+requires-python = ">=3.12"
+dependencies = ["lightgbm>=4.5", "mlflow>=2.16", "pandas", "scikit-learn", "sqlalchemy", "psycopg[binary]"]
+
+[project.optional-dependencies]
+gpu = ["torch"]   # for the optional deep-learning baseline on GPU