Initial release: rarelens platform skeleton (AGPL-3.0)

End-to-end variant interpretation platform for rare genetic disease research:
SvelteKit UI, FastAPI + PostgreSQL API, Nextflow/Ensembl VEP pipeline,
LightGBM pathogenicity scoring with MLflow, K8s/ArgoCD/GCP infrastructure.
Public test data only; no clinical claims.

ml/Dockerfile

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+FROM python:3.12-slim
+WORKDIR /ml
+RUN pip install --no-cache-dir uv
+COPY pyproject.toml .
+RUN uv pip install --system -e .
+COPY rarelens_ml ./rarelens_ml
+ENTRYPOINT ["python", "-m", "rarelens_ml.train"]