Initial release: rarelens platform skeleton (AGPL-3.0)

End-to-end variant interpretation platform for rare genetic disease research:
SvelteKit UI, FastAPI + PostgreSQL API, Nextflow/Ensembl VEP pipeline,
LightGBM pathogenicity scoring with MLflow, K8s/ArgoCD/GCP infrastructure.
Public test data only; no clinical claims.

infra/k8s/overlays/local/kustomization.yaml

@@ -0,0 +1,9 @@
+apiVersion: kustomize.config.k8s.io/v1beta1
+kind: Kustomization
+resources: [../../base, postgres.yaml]
+images:
+  - { name: rarelens/api, newName: rarelens-api, newTag: dev }
+  - { name: rarelens/web, newName: rarelens-web, newTag: dev }
+secretGenerator:
+  - name: api-secrets
+    literals: [DATABASE_URL=postgresql+asyncpg://rarelens:rarelens@postgres:5432/rarelens]

infra/k8s/overlays/local/postgres.yaml

@@ -0,0 +1,20 @@
+apiVersion: apps/v1
+kind: Deployment
+metadata: { name: postgres }
+spec:
+  selector: { matchLabels: { app: postgres } }
+  template:
+    metadata: { labels: { app: postgres } }
+    spec:
+      containers:
+        - name: postgres
+          image: postgres:16-alpine
+          env:
+            - { name: POSTGRES_USER, value: rarelens }
+            - { name: POSTGRES_PASSWORD, value: rarelens }
+            - { name: POSTGRES_DB, value: rarelens }
+---
+apiVersion: v1
+kind: Service
+metadata: { name: postgres }
+spec: { selector: { app: postgres }, ports: [{ port: 5432 }] }