kemalandClaude Opus 5.5
febdd121ef
- genotype/clusters.py: EGT aligned to manifest order (float32 mean R) - genotype/gencall.py: flair, six-case likelihood, priors/posteriors, fuzzy sub-scores and score map, vectorised with the reference's float/double evaluation order and libm transcendentals - genotype/baf_lrr.py, sex.py (rules v1/v2), sample.py (IDAT -> Gtc) - pipeline/inputs.py shared by ingest and genotype - pipeline/genotype.py + CLI: GTC per sample, sample_summary.tsv/json (OUT-060..063), run manifest - GTCs from IDATs are byte-identical to the oracle for 36 GSA samples x 2 normalization versions (NaN sign canonicalised to the x86 pattern) Co-Authored-By: Claude Opus 5.5 <[email protected]> Claude-Session: https://claude.ai/code/session_01814GKVzZVL3FuF3DeiZXhv