kemal f11b39b5a3 v1.0.0: user guide, examples, changelog ...

docs/user_guide.md (install, inputs, complete run, commands, presets, QC, outputs,
accuracy, limitations, troubleshooting), examples/gsa_demo.sh (end-to-end run on the
public GSA demo, verified on the Pi), examples/sample_sheet.csv, CHANGELOG.md; version 1.0.0.

2026-09-28 20:38:24 +01:00

..

research

Add sanitized Phase-0 research archive under docs/research

2026-09-27 16:27:34 +01:00

validation

P8 complete: scientific validation on GSE165845 vs NYGC 30x and GIAB HG001

2026-09-28 19:47:34 +01:00

known_unknowns.md

P8 complete: scientific validation on GSE165845 vs NYGC 30x and GIAB HG001

2026-09-28 19:47:34 +01:00

messages.md

P6: gtc-to-vcf (VCF/BCF + indexes), harmonisation, exports (plink, bedgraph, finalreport)

2026-09-28 12:17:53 +01:00

user_guide.md

v1.0.0: user guide, examples, changelog

2026-09-28 20:38:24 +01:00