kemal 7904399161 P5: cloud task for cohort QC validation; configurable gp3 throughput; batched contamination map ...

- scripts/cloud/tasks/p5.sh: P4 preset re-check, genotype (v5) with QC, validate_p5_large.py
- scripts/validate_p5_large.py: identify samples via het pattern vs 1000G VCF; sex, parent-offspring,
  Mendel, contamination/control distributions
- trial.sh: DISK_MBPS / DISK_IOPS
- qc/contamination: bounded map batches (executor.map submits eagerly)

2026-09-28 09:10:02 +01:00

..

p1p2.sh

P3: vectorised nearest-neighbour search; task-driven cloud trials

2026-09-27 22:57:03 +01:00

p3.sh

P3: vectorised nearest-neighbour search; task-driven cloud trials

2026-09-27 22:57:03 +01:00

p4.sh

P4: unit tests for calling/BAF/LRR/sex/CLI; vendor validation script

2026-09-28 00:10:47 +01:00

p5.sh

P5: cloud task for cohort QC validation; configurable gp3 throughput; batched contamination map

2026-09-28 09:10:02 +01:00