kemal a7ea7c3bdf P8 complete: scientific validation on GSE165845 vs NYGC 30x and GIAB HG001 ...

360 GSA arrays (120 1000 Genomes individuals x 3 replicates): concordance 0.9934 vs
NYGC 30x (0.9958 on sites in both sets), 0.9985 vs GIAB HG001 v4.2.1 (non-ref F1
0.997), replicate concordance 0.9966; allele-swap sites 0.016 %; 358/360 replicate
pairs detected as duplicates. Plan §16.5 metrics in docs/validation/P8.md (K-024).

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..

research

Add sanitized Phase-0 research archive under docs/research

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validation

P8 complete: scientific validation on GSE165845 vs NYGC 30x and GIAB HG001

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known_unknowns.md

P8 complete: scientific validation on GSE165845 vs NYGC 30x and GIAB HG001

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messages.md

P6: gtc-to-vcf (VCF/BCF + indexes), harmonisation, exports (plink, bedgraph, finalreport)

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