kemal a19448f758 Tidy the repository: remove docs/research and bench, fix references

2026-09-30 08:07:35 +01:00

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cnv.sh

v2 CN: truth validation script (NYGC 30x SV freeze V3) and cloud task cnv

2026-09-29 01:39:49 +01:00

meth.sh

v2 methylation: sesame oracle scripts and cloud task

2026-09-29 00:14:18 +01:00

p1p2.sh

P3: vectorised nearest-neighbour search; task-driven cloud trials

2026-09-27 22:57:03 +01:00

p3.sh

P3: vectorised nearest-neighbour search; task-driven cloud trials

2026-09-27 22:57:03 +01:00

p4.sh

P4: unit tests for calling/BAF/LRR/sex/CLI; vendor validation script

2026-09-28 00:10:47 +01:00

p5.sh

P5: cloud task for cohort QC validation; configurable gp3 throughput; batched contamination map

2026-09-28 09:10:02 +01:00

p8.sh

P8 cloud task: stream NYGC VCFs through bcftools instead of downloading

2026-09-28 19:06:36 +01:00

p10.sh

CLI: a closed stdout pipe exits 141 silently (was E_INTERNAL); example avoids head under pipefail

2026-09-28 23:14:47 +01:00

p10t.sh

CLI: a closed stdout pipe exits 141 silently (was E_INTERNAL); example avoids head under pipefail

2026-09-28 23:14:47 +01:00