kemalandClaude Opus 5.5
29c5fbb215
cn call now records per-chromosome and sample statistics (percent het, LRR stats, BAF deviations, robust LogR dev, call rate) in the sidecar; cn annotate writes <sample>.cyto.json (CYTO-033) with ISCN microarray/traditional strings (CYTO-034), bands and RefSeq gene lists (CYTO-035), LOH summaries, weighted median CN (CYTO-026); annotation bundle from UCSC cytoBand + ncbiRefSeq (CYTO-036, IN-054). Tests for ISCN strings, gene overlap, sidecar-missing error and an end-to-end call+annotate. Co-Authored-By: Claude Opus 5.5 <[email protected]> Claude-Session: https://claude.ai/code/session_01814GKVzZVL3FuF3DeiZXhv