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SimurgArray/docs/validation/P4_omni2141_summary.json
T
kemal f469c97917 P4 validated on 2141 vendor GTCs; legacy AutoCall 1.6.2 preset 
- vendor comparison (1000 Genomes Omni2.5, AutoCall 1.6.2.2): every
  computed field identical in 2138/2141 samples; the 3 others trace back
  to the single-locus raw-intensity rule (K-009); sex rule 1 matches all
- AutoCall 1.6.2.x leaves GC10/GC50/#calls/#no-calls at 0 in GTC v3:
  new `--preset autocall-1.6.2` (1.1.2 normalization, sex rule 1, GTC v3,
  legacy statistics); the sample summary keeps the real statistics
- NaN sign canonicalised to the x86 pattern (K-014); report P4.md
2026-09-28 01:21:49 +01:00

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{
"n_gtc": 2141,
"n_compared": 2141,
"errors": [],
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"samples_with_no_field_diff": 0,
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"raw_x": 1,
"genotypes": 3,
"genotype_scores": 3,
"base_calls": 3,
"call_rate": 2,
"logr_dev": 3,
"raw_y": 2,
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},
"genotype_diff_loci_total": 5,
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},
"ref_sex_counts": {
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"U": 0
},
"examples": [
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],
"params": {
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},
"seconds": 1174.6,
"passed": false
}
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