kemal 675eea4855 derive_masks: keep pysam's downloaded tabix indexes in data/pgx/cache, not the working directory

2026-09-29 16:00:25 +01:00

..

build_cn_regions.py

PGx star alleles: pgx star-allele call (PGX-011..021), probe masks vs 1000G, GeT-RM validation (K-029)

2026-09-29 14:08:03 +01:00

demo36_identity.tsv

PGx CN: pgx copy-number train|call (CLI-031/032, PCN-001..017, IN-050), region BED v1, demo identities (K-028)

2026-09-29 13:16:19 +01:00

derive_masks.py

derive_masks: keep pysam's downloaded tabix indexes in data/pgx/cache, not the working directory

2026-09-29 16:00:25 +01:00

fetch_sources.sh

PGx DB: pgx db build from CPIC (PGX-001..005, IN-053, CLI-035)

2026-09-29 13:24:54 +01:00

getrm_truth.py

PGx star alleles: pgx star-allele call (PGX-011..021), probe masks vs 1000G, GeT-RM validation (K-029)

2026-09-29 14:08:03 +01:00

validate_cn_truth.py

PGx star alleles: pgx star-allele call (PGX-011..021), probe masks vs 1000G, GeT-RM validation (K-029)

2026-09-29 14:08:03 +01:00

validate_star_getrm.py

PGx star alleles: pgx star-allele call (PGX-011..021), probe masks vs 1000G, GeT-RM validation (K-029)

2026-09-29 14:08:03 +01:00