# SimurgArray

Personal research toolkit for Illumina Infinium genotyping BeadChip data
(IDAT → normalization → genotype calling → BAF/LRR → QC → VCF/PLINK; later CN/LOH, PGx, cluster training).

Start with **SIMURGARRAY_MASTER_PLAN.md** (full specification and roadmap).

```bash
bash scripts/bootstrap_refs.sh     # clone reference open-source repos into refs/
bash scripts/fetch_data.sh p0      # download small test datasets into data/
```