{ "dataset": "GSE165845 GSA v1 (C2 build-38 BPM); train = replicate 3 (120 arrays), evaluate = replicates 1-2 (240 arrays)", "truth": "1000G NYGC 30x phased panel, chr22 SNVs on the array", "egt_v1_fixed_windows": { "chrom": "22", "samples": 240, "truth_sites": 8278, "call_rate": 0.9947053434807118, "concordance": 0.9926765907658587, "nrd": 0.018946074088334416 }, "egt_v2_bic_hwe": { "chrom": "22", "samples": 240, "truth_sites": 8278, "call_rate": 0.9960623540307643, "concordance": 0.9943676222304063, "nrd": 0.013034595450012981 }, "vendor_gsa_v1_c1_egt": { "chrom": "22", "samples": 240, "truth_sites": 8278, "call_rate": 0.9915201940887493, "concordance": 0.9945781643910259, "nrd": 0.012251034586575862 } }