{ "samples": 360, "min_qual": 20, "ignored_filters": [], "sensitivity": { "DEL": { "100-500kb": { "found": 128, "truth": 1554, "rate": 0.0824 }, "1000-infkb": { "found": 0, "truth": 15, "rate": 0.0 }, "25-50kb": { "found": 12, "truth": 225, "rate": 0.0533 }, "50-100kb": { "found": 59, "truth": 894, "rate": 0.066 }, "500-1000kb": { "found": 16, "truth": 180, "rate": 0.0889 } }, "DUP": { "100-500kb": { "found": 109, "truth": 1059, "rate": 0.1029 }, "1000-infkb": { "found": 9, "truth": 21, "rate": 0.4286 }, "25-50kb": { "found": 0, "truth": 198, "rate": 0.0 }, "50-100kb": { "found": 13, "truth": 462, "rate": 0.0281 }, "500-1000kb": { "found": 11, "truth": 78, "rate": 0.141 } } }, "sensitivity_by_carrier_frequency": { "DEL": { "5-20%": { "found": 15, "truth": 285, "rate": 0.0526 }, "common>=20%": { "found": 1, "truth": 1923, "rate": 0.0005 }, "rare<5%": { "found": 199, "truth": 660, "rate": 0.3015 } }, "DUP": { "5-20%": { "found": 21, "truth": 102, "rate": 0.2059 }, "common>=20%": { "found": 5, "truth": 855, "rate": 0.0058 }, "rare<5%": { "found": 116, "truth": 861, "rate": 0.1347 } } }, "precision": { "DEL": { "in_truth": 213, "calls": 480, "rate": 0.4437 }, "DUP": { "in_truth": 142, "calls": 249, "rate": 0.5703 } }, "replicate_reproducibility": { "CNV": { "matched": 512, "comparisons": 1458, "rate": 0.3512 }, "LOH": { "matched": 356, "comparisons": 420, "rate": 0.8476 } }, "calls_per_sample_median": 1.0, "loh_calls_per_sample_median": 0.0 }