kemal/SimurgArray
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v2.0.0
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7 Commits
Author SHA1 Message Date
kemal af39d0ee6a Release 2.0.0: v2 modules (ArrayTrain, CN/LOH, PGx, methylation QC)
ci / test (3.12) (push) Failing after 9s
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ci / test (3.13) (push) Failing after 16s
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User guide: ArrayTrain section, v2 commands in the table, v2 accuracy rows,
updated limitations. README status for v2.0.0. Version 2.0.0 (Python package);
the Rust kernels are unchanged and stay simurg_core 1.1.0. uv.lock committed
(uv lock --check clean).

Full suite on the Pi, file by file under the memory guard: 29 files exit 0
(unit: 282 passed), ruff and mypy clean.
 2026-09-30 06:24:12 +01:00
kemal 151723d5e1 docs: user guide sections for CN/LOH/mosaicism and pharmacogenomics 2026-09-29 17:15:43 +01:00
kemal 03587b2b0a sesame oracle: explicit platform, cache fallback 2026-09-29 00:18:17 +01:00
kemal d235dc5419 Release 1.1.0: compiled kernels (P9) and packaging (P10)
ci / test (3.12) (push) Failing after 9s
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ci / test (3.13) (push) Failing after 12s
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2026-09-28 23:56:39 +01:00
kemal 0b05b0d346 P10 complete: packaging verified on fresh x86_64 and aarch64 VMs 
Wheels (pure + manylinux_2_28 kernels), sdist, Docker image and conda packages built and
installed on fresh Ubuntu 24.04 machines; 225 unit tests pass against the installed
package; the tutorial runs with pip (with and without kernels); GTC/VCF content digests are
identical across pip, Docker and conda on both architectures and equal to the Pi's run.
docs/validation/P10.md; guide: install from wheels, Docker, conda; exit code 141.
 2026-09-28 23:53:59 +01:00
kemal f0d3739493 P9 cloud task: install gcc (linker for the Rust build); guide: kernel installation 2026-09-28 21:35:42 +01:00
kemal 7bdd5dc03c v1.0.0: user guide, examples, changelog
ci / test (3.12) (push) Failing after 10s
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ci / test (3.13) (push) Failing after 13s
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docs/user_guide.md (install, inputs, complete run, commands, presets, QC, outputs,
accuracy, limitations, troubleshooting), examples/gsa_demo.sh (end-to-end run on the
public GSA demo, verified on the Pi), examples/sample_sheet.csv, CHANGELOG.md; version 1.0.0.
 2026-09-28 20:38:24 +01:00