kemal/SimurgArray
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f52313fc93a4975d524d3624406faab74ace7d22
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2 Commits
Author SHA1 Message Date
kemalandClaude Opus 5.5 f52313fc93 cloud trial: set HOME/PATH for cloud-init, unit tests non-fatal
ci / test (3.12) (push) Failing after 8s
Details
ci / test (3.13) (push) Failing after 10s
Details 
The first run stopped after 1 minute (HOME unbound under set -u) and
terminated itself as designed.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01814GKVzZVL3FuF3DeiZXhv
 2026-09-27 19:36:49 +01:00
kemalandClaude Opus 5.5 a9aa6dc080 Add self-destructing AWS trial and large-scale P1 validation script
ci / test (3.12) (push) Failing after 9s
Details
ci / test (3.13) (push) Failing after 13s
Details 
scripts/cloud/trial.sh launches one spot instance that validates the
parsers on the 1000 Genomes Omni2.5 set (2141 samples, vendor GTCs)
streamed from the public S3 bucket, uploads the summary and terminates
itself. Cost guards: spot price cap, hard time limit (shutdown =
terminate), EXIT-trap shutdown, CloudWatch idle alarm that terminates
from outside, disk deleted with the instance, monthly budget alert, and
an `audit` command listing anything still billable.

scripts/validate_p1_large.py compares every GTC with BeadArrayFiles,
checks byte-identical round-trips, IDAT pairs and BPM/EGT/CSV.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01814GKVzZVL3FuF3DeiZXhv
 2026-09-27 19:30:27 +01:00