kemal/SimurgArray
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Author SHA1 Message Date
kemal 7f3cd96fc4 Release 1.1.0: compiled kernels (P9) and packaging (P10)
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2026-09-28 23:56:39 +01:00
kemal f64bdf11f2 v1.0.0: user guide, examples, changelog
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docs/user_guide.md (install, inputs, complete run, commands, presets, QC, outputs,
accuracy, limitations, troubleshooting), examples/gsa_demo.sh (end-to-end run on the
public GSA demo, verified on the Pi), examples/sample_sheet.csv, CHANGELOG.md; version 1.0.0.
 2026-09-28 20:38:24 +01:00
kemal 8cd092460f P1: file parsers, sample sheet, discovery, CLI inspect 
Readers for IDAT v3, BPM (locus entries v4-v8), CSV manifest, EGT
(data blocks 5-9) and GTC v3-v5 (plus a layout-preserving GTC writer);
sample-sheet validation (IN-001..IN-014), IDAT discovery and pairing
(IN-020..IN-022), message catalogue and exit codes (CLI-014/016),
JSON Lines logging (CLI-007/008), atomic writes (CLI-011), run manifest,
and `simurg inspect`.

Validation (docs/validation/P1.md): GTC, BPM and EGT readers agree
exactly with Illumina BeadArrayFiles on GSA v4 / GDA v1 files; GTCs
round-trip byte-identically; BPM and CSV manifests are consistent.
 2026-09-27 16:56:39 +01:00